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NPNT nephronectin [ Protobothrops mucrosquamatus ]

Gene ID: 107303102, updated on 14-Mar-2024

Summary

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Gene symbol
NPNT
Gene description
nephronectin
Gene type
protein coding
RefSeq status
MODEL
Organism
Protobothrops mucrosquamatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Protobothrops
Orthologs
human mouse all
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Genomic context

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See NPNT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current P.Mucros_1.0 (GCF_001527695.2) Unplaced Scaffold NW_015386080.1 (189666..215238)

NW_015386080.1Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 12 Neighboring gene glutathione S-transferase C-terminal domain containing Neighboring gene TBC1 domain containing kinase Neighboring gene aminoacyl tRNA synthetase complex interacting multifunctional protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015386080 Unplaced Scaffold Reference P.Mucros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: nephronectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protobothrops mucrosquamatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.Mucros_1.0 Primary Assembly

Genomic

  1. NW_015386080.1 Reference P.Mucros_1.0 Primary Assembly

    Range
    189666..215238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029287314.1 → XP_029143147.1  LOW QUALITY PROTEIN: nephronectin

    Conserved Domains (5) summary
    cd06263
    Location:378 → 517
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam07645
    Location:101 → 133
    EGF_CA; Calcium-binding EGF domain
    pfam12947
    Location:150 → 185
    EGF_3; EGF domain
    pfam12662
    Location:82 → 104
    cEGF; Complement Clr-like EGF-like
    pfam14670
    Location:25 → 59
    FXa_inhibition; Coagulation Factor Xa inhibitory site
Nucleotide Protein
Heading Accession and Version

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