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THBS2 thrombospondin 2 [ Protobothrops mucrosquamatus ]

Gene ID: 107293307, updated on 14-Mar-2024

Summary

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Gene symbol
THBS2
Gene description
thrombospondin 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Protobothrops mucrosquamatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Protobothrops
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See THBS2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current P.Mucros_1.0 (GCF_001527695.2) Unplaced Scaffold NW_015387738.1 (246..30696)

NW_015387738.1Genomic Context describing neighboring genes Neighboring gene SPARC related modular calcium binding 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015387738 Unplaced Scaffold Reference P.Mucros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protobothrops mucrosquamatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.Mucros_1.0 Primary Assembly

Genomic

  1. NW_015387738.1 Reference P.Mucros_1.0 Primary Assembly

    Range
    246..30696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015822454.1 → XP_015677940.1  thrombospondin-2

    Conserved Domains (8) summary
    smart00209
    Location:120 → 172
    TSP1; Thrombospondin type 1 repeats
    sd00001
    Location:470 → 507
    TSP3; TSP3 repeat_long [structural motif]
    sd00002
    Location:412 → 446
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:316 → 351
    TSP3_1C; TSP3 repeat_1C [structural motif]
    pfam00090
    Location:8 → 53
    TSP_1; Thrombospondin type 1 domain
    pfam02412
    Location:471 → 507
    TSP_3; Thrombospondin type 3 repeat
    pfam05735
    Location:597 → 794
    TSP_C; Thrombospondin C-terminal region
    pfam12947
    Location:275 → 314
    EGF_3; EGF domain
Nucleotide Protein
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