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COL4A4 collagen type IV alpha 4 chain [ Protobothrops mucrosquamatus ]

Gene ID: 107286669, updated on 14-Mar-2024

Summary

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Gene symbol
COL4A4
Gene description
collagen type IV alpha 4 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Protobothrops mucrosquamatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Protobothrops
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See COL4A4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
46
Annotation release Status Assembly Chr Location
101 current P.Mucros_1.0 (GCF_001527695.2) Unplaced Scaffold NW_015386648.1 (484873..549172, complement)

NW_015386648.1Genomic Context describing neighboring genes Neighboring gene insulin receptor substrate 1 Neighboring gene rhomboid domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015386648 Unplaced Scaffold Reference P.Mucros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-4(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protobothrops mucrosquamatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.Mucros_1.0 Primary Assembly

Genomic

  1. NW_015386648.1 Reference P.Mucros_1.0 Primary Assembly

    Range
    484873..549172 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029283982.1 → XP_029139815.1  collagen alpha-4(IV) chain

    Conserved Domains (3) summary
    pfam01391
    Location:1068 → 1125
    Collagen; Collagen triple helix repeat (20 copies)
    pfam09606
    Location:880 → 1238
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01413
    Location:1439 → 1543
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
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