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TECTA tectorin alpha [ Protobothrops mucrosquamatus ]

Gene ID: 107285538, updated on 14-Mar-2024

Summary

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Gene symbol
TECTA
Gene description
tectorin alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Protobothrops mucrosquamatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Protobothrops
Orthologs
human mouse all
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Genomic context

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See TECTA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
101 current P.Mucros_1.0 (GCF_001527695.2) Unplaced Scaffold NW_015386544.1 (70957..114669, complement)

NW_015386544.1Genomic Context describing neighboring genes Neighboring gene sortilin-related receptor-like Neighboring gene sterol-C5-desaturase Neighboring gene tubulin folding cofactor E like Neighboring gene trafficking kinesin-binding protein 1 pseudogene Neighboring gene glutamate ionotropic receptor kainate type subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015386544 Unplaced Scaffold Reference P.Mucros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-tectorin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protobothrops mucrosquamatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.Mucros_1.0 Primary Assembly

Genomic

  1. NW_015386544.1 Reference P.Mucros_1.0 Primary Assembly

    Range
    70957..114669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015813735.1 → XP_015669221.1  alpha-tectorin

    Conserved Domains (10) summary
    smart00216
    Location:714 → 866
    VWD; von Willebrand factor (vWF) type D domain
    smart00241
    Location:1804 → 2058
    ZP; Zona pellucida (ZP) domain
    smart00539
    Location:98 → 254
    NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
    smart00832
    Location:517 → 593
    C8; This domain contains 8 conserved cysteine residues
    pfam00094
    Location:322 → 478
    VWD; von Willebrand factor type D domain
    pfam00100
    Location:1936 → 2056
    Zona_pellucida; Zona pellucida-like domain
    pfam01826
    Location:598 → 651
    TIL; Trypsin Inhibitor like cysteine rich domain
    pfam08742
    Location:1302 → 1372
    C8; C8 domain
    pfam14670
    Location:2088 → 2120
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl17735
    Location:653 → 707
    VWC; von Willebrand factor type C domain
Nucleotide Protein
Heading Accession and Version

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