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DCN decorin [ Protobothrops mucrosquamatus ]

Gene ID: 107284773, updated on 14-Mar-2024

Summary

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Gene symbol
DCN
Gene description
decorin
Gene type
protein coding
RefSeq status
MODEL
Organism
Protobothrops mucrosquamatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Protobothrops
Orthologs
human mouse all
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Genomic context

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See DCN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current P.Mucros_1.0 (GCF_001527695.2) Unplaced Scaffold NW_015386141.1 (1224800..1251820)

NW_015386141.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107284592 Neighboring gene BTG anti-proliferation factor 1 Neighboring gene lumican Neighboring gene keratocan

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015386141 Unplaced Scaffold Reference P.Mucros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
decorin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protobothrops mucrosquamatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.Mucros_1.0 Primary Assembly

Genomic

  1. NW_015386141.1 Reference P.Mucros_1.0 Primary Assembly

    Range
    1224800..1251820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015812890.2 → XP_015668376.1  decorin

    Conserved Domains (5) summary
    smart00013
    Location:49 → 80
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:79 → 283
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:289 → 302
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:57 → 77
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:79 → 136
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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