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LOC107281766 small ribosomal subunit protein uS7cz/uS7cy [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107281766, updated on 1-Aug-2024

Summary

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Gene symbol
LOC107281766
Gene description
small ribosomal subunit protein uS7cz/uS7cy
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 16.8), leaves before flowering (RPKM 16.2) and 5 other tissues See more
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Genomic context

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See LOC107281766 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (14392040..14394149)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (14236868..14237507)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357364 Neighboring gene uncharacterized LOC107278268 Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene uncharacterized LOC107275265

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein uS7cz/uS7cy
Names
30S ribosomal protein S7, chloroplastic
OSJNBa0067K15.17
ribosomal protein S7, chloroplast

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    14392040..14394149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066312329.1 → XP_066168426.1  small ribosomal subunit protein uS7cz/uS7cy

    UniProtKB/Swiss-Prot
    P0C489, P0C490, P0C491, P62730, Q6QXY0, Q6QY30
    UniProtKB/TrEMBL
    A0A0K0LKZ1, A0A0K0LR14, A0A0N7EIV3, A0A0N9E0L8, A0A7S7YAD8, C7J1G7, J3RQ63, Q6YTM6, Q8S6H6
Nucleotide Protein
Heading Accession and Version

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