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LOC107276423 hydroxyproline O-galactosyltransferase GALT2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107276423, updated on 17-Jul-2024

Summary

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Gene symbol
LOC107276423
Gene description
hydroxyproline O-galactosyltransferase GALT2
Locus tag
OSNPB_120613850
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 10.4), flower buds (RPKM 8.9) and 6 other tissues See more
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Genomic context

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See LOC107276423 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26732635..26736757)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (26016538..26020754)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene remorin 4.1-like Neighboring gene auxin response factor 25-like Neighboring gene mediator of RNA polymerase II transcription subunit 19a Neighboring gene phospholipase A1-II 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT2
Names
Os12g0613850
probable beta-1,3-galactosyltransferase 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    26732635..26736757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764283.3 → XP_015619769.1  hydroxyproline O-galactosyltransferase GALT2

    UniProtKB/TrEMBL
    B8BMZ9, Q2QM83
    Conserved Domains (1) summary
    PLN03133
    Location:125 → 658
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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