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LOC107276400 putative cellulose synthase A catalytic subunit 11 [UDP-forming] [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107276400, updated on 12-Jul-2024

Summary

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Gene symbol
LOC107276400
Gene description
putative cellulose synthase A catalytic subunit 11 [UDP-forming]
Locus tag
OSNPB_060601600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CESA11; OsCesA11
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Genomic context

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See LOC107276400 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (24629745..24632827)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (23777425..23781146)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357039 Neighboring gene transcription factor HY5 Neighboring gene uncharacterized LOC107281168 Neighboring gene uncharacterized LOC9270696 Neighboring gene DEAD-box ATP-dependent RNA helicase 52A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative cellulose synthase A catalytic subunit 11 [UDP-forming]
Names
LOC_Os06g39970
Os06g0601600
P0457B11.25
P0486H12.12
putative cellulose synthase-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    24629745..24632827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785773.3 → XP_015641259.2  putative cellulose synthase A catalytic subunit 11 [UDP-forming]

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q69XK5.1 GenPept UniProtKB/Swiss-Prot:Q69XK5

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