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LOC107276327 putative mixed-linked glucan synthase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107276327, updated on 17-Jul-2024

Summary

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Gene symbol
LOC107276327
Gene description
putative mixed-linked glucan synthase 1
Locus tag
OSNPB_070553000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CSFL1; OsCslF1; P0013G11.6
Expression
Biased expression in flowers (RPKM 38.6) and flower buds (RPKM 11.7) See more
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Genomic context

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See LOC107276327 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22218182..22221016)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21988998..21991926)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene mixed-linked glucan synthase 2-like Neighboring gene uncharacterized LOC136357345 Neighboring gene mixed-linked glucan synthase 4 Neighboring gene probable mixed-linked glucan synthase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative mixed-linked glucan synthase 1
Names
1,3/1,4-beta D-glucan synthase 1
Cellulose synthase-like protein F1
LOC_Os07g36700
putative cellulose synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    22218182..22221016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789553.3 → XP_015645039.1  putative mixed-linked glucan synthase 1

    UniProtKB/Swiss-Prot
    Q6ZF89, Q944E2
    UniProtKB/TrEMBL
    A0A0P0X7S3
    Conserved Domains (1) summary
    PLN02248
    Location:41 → 815
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZF89.1 GenPept UniProtKB/Swiss-Prot:Q6ZF89

Gene LinkOut

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Molecular Biology Databases