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LOC107275650 probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107275650, updated on 17-Jul-2024

Summary

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Gene symbol
LOC107275650
Gene description
probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2
Locus tag
OSNPB_020628000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LOGL2; OsJ_07599
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Genomic context

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See LOC107275650 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25595654..25599058)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25109110..25112774)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein CNGC15b Neighboring gene cyclin-B1-3-like Neighboring gene putative disease resistance protein RGA3 Neighboring gene UDP-xylose transporter 1 Neighboring gene auxin response factor 8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing N-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2
Names
LOC_Os02g41770
Protein LONELY GUY-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    25595654..25599058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767376.3 → XP_015622862.1  probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2

    UniProtKB/Swiss-Prot
    A0A0P0VLX1, B9F166
    UniProtKB/TrEMBL
    A2X7G1
    Conserved Domains (1) summary
    cl22881
    Location:23 → 198
    DNA_processg_A; DNA recombination-mediator protein A
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B9F166.1 GenPept UniProtKB/Swiss-Prot:B9F166

Gene LinkOut

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