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LpxC4 UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 10723064, updated on 7-Sep-2023

Summary

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Gene symbol
LpxC4
Gene description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Primary source
Araport:AT1G25145
Locus tag
AT1G25145
See related
TAIR:AT1G25145
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtLpxC4; lipid X C4
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Genomic context

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See LpxC4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (8818867..8820736)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene F-box family protein Neighboring gene Glutamine amidotransferase type 1 family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pathway for lipid A biosynthesis in Arabidopsis thaliana resembling that of Escherichia coli. Li C, et al. Proc Natl Acad Sci U S A, 2011 Jul 12. PMID 21709257, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables UDP-3-O-acyl-N-acetylglucosamine deacetylase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in lipid X metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
NP_001185090.1
  • UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8818867..8820736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198161.1 → NP_001185090.1  UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185090.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H6R1, E2RTM8, F4IAT8, F4IAW1, F4IAW2, P0C2G7, P0DKB7, P0DKB8, P0DKB9, Q56X64, Q56XG5, Q8GXP0, Q8LPR6
    UniProtKB/TrEMBL
    A0A5S9VTW0, A0A654EDT1
    Conserved Domains (1) summary
    pfam03331
    Location:39 → 323
    LpxC; UDP-3-O-acyl N-acetylglycosamine deacetylase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IAT8.2
F4IAW1.2
P0DKB7.1
P0DKB8.1
P0DKB9.1

Gene LinkOut

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Molecular Biology Databases
Research Materials