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LOC107221019 alkylated DNA repair protein alkB homolog 8 [ Neodiprion lecontei (redheaded pine sawfly) ]

Gene ID: 107221019, updated on 10-Oct-2024

Summary

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Gene symbol
LOC107221019
Gene description
alkylated DNA repair protein alkB homolog 8
See related
EnsemblRapid:ENSNLCG00000016136
Gene type
protein coding
RefSeq status
MODEL
Organism
Neodiprion lecontei
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Diprionidae; Diprioninae; Neodiprion
Orthologs
fruit fly honey bee all
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Genomic context

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See LOC107221019 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
101 current iyNeoLeco1.1 (GCF_021901455.1) 6 NC_060265.1 (3670183..3672997, complement)
100 previous assembly Nlec1.0 (GCF_001263575.1) Unplaced Scaffold NW_015383971.1 (47835..50513)

Chromosome 6 - NC_060265.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein DSP1 Neighboring gene high mobility group protein DSP1 Neighboring gene uncharacterized LOC124294944 Neighboring gene cytochrome P450 9e2 Neighboring gene uncharacterized LOC107221029

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Support for the adaptive decoupling hypothesis from whole-transcriptome profiles of a hypermetamorphic and sexually dimorphic insect, Neodiprion lecontei. Herrig DK, et al. Mol Ecol, 2021 Sep. PMID 34174126
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkylated DNA repair protein alkB homolog 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neodiprion lecontei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyNeoLeco1.1

Genomic

  1. NC_060265.1 Reference iyNeoLeco1.1

    Range
    3670183..3672997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015659857.2 → XP_015515343.2  alkylated DNA repair protein alkB homolog 8

    Related
    ENSNLCP00000030131.1, ENSNLCT00000034499.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases