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ACO1 aconitase 1 [ Parus major (Great Tit) ]

Gene ID: 107216073, updated on 3-Aug-2024

Summary

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Gene symbol
ACO1
Gene description
aconitase 1
See related
Ensembl:ENSPMJG00000004235
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See ACO1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
21
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) Z NC_031799.1 (46340060..46375013, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) Z NC_029299.1 (46340050..46375014, complement)

Chromosome Z - NC_031799.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 4 inhibitor B Neighboring gene uncharacterized LOC107198352 Neighboring gene RNA sensor RIG-I Neighboring gene diacylglycerol kinase theta Neighboring gene tudor domain containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aconitate hydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in citrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic aconitate hydratase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031799.1 Reference Parus_major1.1 Primary Assembly

    Range
    46340060..46375013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015652570.2 → XP_015508056.1  cytoplasmic aconitate hydratase

    Related
    ENSPMJP00000004908.1, ENSPMJT00000006875.1
    Conserved Domains (3) summary
    cd01586
    Location:82 → 566
    AcnA_IRP; Aconitase A catalytic domain
    cd01580
    Location:671 → 839
    AcnA_IRP_Swivel; Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group ...
    PTZ00092
    Location:2 → 889
    PTZ00092; aconitate hydratase-like protein; Provisional
Nucleotide Protein
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