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CSPG5 chondroitin sulfate proteoglycan 5 [ Parus major (Great Tit) ]

Gene ID: 107215339, updated on 3-Aug-2024

Summary

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Gene symbol
CSPG5
Gene description
chondroitin sulfate proteoglycan 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See CSPG5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 2 NC_031769.1 (43733..48436, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 2 NC_029269.1 (43689..48436, complement)

Chromosome 2 - NC_031769.1Genomic Context describing neighboring genes Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene uncharacterized LOC107201010 Neighboring gene splicing factor 3A subunit 2-like Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit C1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031769.1 Reference Parus_major1.1 Primary Assembly

    Range
    43733..48436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015651443.2 → XP_015506929.1  chondroitin sulfate proteoglycan 5

    Conserved Domains (2) summary
    pfam06567
    Location:104 → 195
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
    cl21472
    Location:57 → 98
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
Nucleotide Protein
Heading Accession and Version

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