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EXTL1 exostosin like glycosyltransferase 1 [ Parus major (Great Tit) ]

Gene ID: 107213996, updated on 3-Aug-2024

Summary

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Gene symbol
EXTL1
Gene description
exostosin like glycosyltransferase 1
See related
Ensembl:ENSPMJG00000017989
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See EXTL1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 23 NC_031791.1 (78364..85096)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 23 NC_029291.1 (78364..85094)

Chromosome 23 - NC_031791.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117245422 Neighboring gene stathmin 1 Neighboring gene platelet activating factor acetylhydrolase 2 Neighboring gene solute carrier family 30 member 2 Neighboring gene tripartite motif containing 63

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031791.1 Reference Parus_major1.1 Primary Assembly

    Range
    78364..85096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015648980.2 → XP_015504466.1  exostosin-like 1 isoform X1

    Related
    ENSPMJP00000024457.1, ENSPMJT00000031615.1
    Conserved Domains (2) summary
    pfam03016
    Location:102 → 385
    Exostosin; Exostosin family
    pfam09258
    Location:471 → 733
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_015648981.2 → XP_015504467.1  exostosin-like 1 isoform X2

    Conserved Domains (2) summary
    pfam03016
    Location:102 → 385
    Exostosin; Exostosin family
    pfam09258
    Location:471 → 724
    Glyco_transf_64; Glycosyl transferase family 64 domain

  3. XM_015648983.2 → XP_015504469.1  exostosin-like 1 isoform X4

    Conserved Domains (2) summary
    pfam03016
    Location:102 → 385
    Exostosin; Exostosin family
    pfam09258
    Location:428 → 690
    Glyco_transf_64; Glycosyl transferase family 64 domain

  4. XM_015648982.2 → XP_015504468.1  exostosin-like 1 isoform X3

    Conserved Domains (2) summary
    pfam03016
    Location:102 → 375
    Exostosin; Exostosin family
    pfam09258
    Location:454 → 716
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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