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AGRN agrin [ Parus major (Great Tit) ]

Gene ID: 107213530, updated on 3-Aug-2024

Summary

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Gene symbol
AGRN
Gene description
agrin
See related
Ensembl:ENSPMJG00000014412
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See AGRN in Genome Data Viewer
Location:
chromosome: 21
Exon count:
26
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 21 NC_031789.1 (6123952..6185702, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 21 NC_029289.1 (6123952..6185702, complement)

Chromosome 21 - NC_031789.1Genomic Context describing neighboring genes Neighboring gene chromosome 21 C1orf159 homolog Neighboring gene ring finger protein 223 Neighboring gene agrin-like Neighboring gene hes family bHLH transcription factor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031789.1 Reference Parus_major1.1 Primary Assembly

    Range
    6123952..6185702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033519371.1 → XP_033375262.1  agrin

    Related
    ENSPMJP00000019282.1, ENSPMJT00000025202.1
    Conserved Domains (9) summary
    smart00280
    Location:265 → 310
    KAZAL; Kazal type serine protease inhibitors
    smart00200
    Location:807 → 931
    SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    PRK07764
    Location:630 → 766
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd00054
    Location:1195 → 1227
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:566 → 607
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00104
    Location:196 → 236
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    pfam00054
    Location:1271 → 1402
    Laminin_G_1; Laminin G domain
    cl00097
    Location:121 → 164
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cl22861
    Location:1084 → 1174
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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