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POMT1 protein O-mannosyltransferase 1 [ Parus major (Great Tit) ]

Gene ID: 107211976, updated on 3-Aug-2024

Summary

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Gene symbol
POMT1
Gene description
protein O-mannosyltransferase 1
See related
Ensembl:ENSPMJG00000006808
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See POMT1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
22
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 17 NC_031785.1 (4552368..4564459, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 17 NC_029285.1 (4552366..4565100, complement)

Chromosome 17 - NC_031785.1Genomic Context describing neighboring genes Neighboring gene proline rich transmembrane protein 1B Neighboring gene uridine-cytidine kinase 1 Neighboring gene uncharacterized LOC107211979 Neighboring gene proline rich coiled-coil 2B Neighboring gene uncharacterized LOC107211980 Neighboring gene uncharacterized LOC117245233

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031785.1 Reference Parus_major1.1 Primary Assembly

    Range
    4552368..4564459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015644630.3 → XP_015500116.1  protein O-mannosyl-transferase 1 isoform X1

    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  2. XM_033518342.1 → XP_033374233.1  protein O-mannosyl-transferase 1 isoform X2

    Conserved Domains (1) summary
    COG1928
    Location:6 → 666
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  3. XM_033518341.1 → XP_033374232.1  protein O-mannosyl-transferase 1 isoform X1

    Related
    ENSPMJP00000008375.1, ENSPMJT00000011403.1
    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  4. XM_015644628.3 → XP_015500114.1  protein O-mannosyl-transferase 1 isoform X1

    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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