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SMPD3 sphingomyelin phosphodiesterase 3 [ Parus major (Great Tit) ]

Gene ID: 107209752, updated on 3-Aug-2024

Summary

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Gene symbol
SMPD3
Gene description
sphingomyelin phosphodiesterase 3
See related
Ensembl:ENSPMJG00000001203
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See SMPD3 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 11 NC_031780.1 (8779602..8877283, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 11 NC_029280.1 (8779605..8877283, complement)

Chromosome 11 - NC_031780.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 member 6 opposite strand Neighboring gene protein arginine methyltransferase 7 Neighboring gene uncharacterized LOC117244976 Neighboring gene uncharacterized LOC107209755 Neighboring gene phospholipase A2 group XV Neighboring gene leukotriene B4 receptor 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031780.1 Reference Parus_major1.1 Primary Assembly

    Range
    8779602..8877283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015639764.2 → XP_015495250.1  sphingomyelin phosphodiesterase 3

    Related
    ENSPMJP00000001467.1, ENSPMJT00000001928.1
    Conserved Domains (1) summary
    cd09078
    Location:343 → 651
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  2. XM_015639762.2 → XP_015495248.1  sphingomyelin phosphodiesterase 3

    Related
    ENSPMJP00000001471.1, ENSPMJT00000001932.1
    Conserved Domains (1) summary
    cd09078
    Location:343 → 651
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  3. XM_033517136.1 → XP_033373027.1  sphingomyelin phosphodiesterase 3

    Conserved Domains (1) summary
    cd09078
    Location:343 → 651
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  4. XM_033517140.1 → XP_033373031.1  sphingomyelin phosphodiesterase 3

    Conserved Domains (1) summary
    cd09078
    Location:343 → 651
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  5. XM_033517137.1 → XP_033373028.1  sphingomyelin phosphodiesterase 3

    Conserved Domains (1) summary
    cd09078
    Location:343 → 651
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  6. XM_033517138.1 → XP_033373029.1  sphingomyelin phosphodiesterase 3

    Conserved Domains (1) summary
    cd09078
    Location:343 → 651
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  7. XM_033517134.1 → XP_033373025.1  sphingomyelin phosphodiesterase 3

    Conserved Domains (1) summary
    cd09078
    Location:343 → 651
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  8. XM_033517135.1 → XP_033373026.1  sphingomyelin phosphodiesterase 3

    Conserved Domains (1) summary
    cd09078
    Location:343 → 651
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine
Nucleotide Protein
Heading Accession and Version

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