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SPTSSB serine palmitoyltransferase small subunit B [ Parus major (Great Tit) ]

Gene ID: 107208537, updated on 3-Aug-2024

Summary

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Gene symbol
SPTSSB
Gene description
serine palmitoyltransferase small subunit B
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See SPTSSB in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 9 NC_031778.1 (23242108..23252795)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 9 NC_029278.1 (23241598..23252795)

Chromosome 9 - NC_031778.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117244858 Neighboring gene otolin 1 Neighboring gene serine palmitoyltransferase small subunit B-like Neighboring gene NMD3 ribosome export adaptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase small subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031778.1 Reference Parus_major1.1 Primary Assembly

    Range
    23242108..23252795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015637014.3 → XP_015492500.1  serine palmitoyltransferase small subunit B isoform X1

    Conserved Domains (1) summary
    pfam11779
    Location:99 → 138
    DUF3317; Protein of unknown function (DUF3317)

  2. XM_015637015.3 → XP_015492501.1  serine palmitoyltransferase small subunit B isoform X2

    Conserved Domains (1) summary
    pfam11779
    Location:20 → 59
    DUF3317; Protein of unknown function (DUF3317)
Nucleotide Protein
Heading Accession and Version

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