U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HPSE2 heparanase 2 (inactive) [ Parus major (Great Tit) ]

Gene ID: 107206892, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
HPSE2
Gene description
heparanase 2 (inactive)
See related
Ensembl:ENSPMJG00000003974
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HPSE2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 6 NC_031775.1 (20262372..20369213)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 6 NC_029275.1 (19255806..19362922)

Chromosome 6 - NC_031775.1Genomic Context describing neighboring genes Neighboring gene glutamic-oxaloacetic transaminase 1 Neighboring gene uncharacterized LOC117244653 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 1 Neighboring gene Hermansky-Pudlak syndrome 1 protein homolog Neighboring gene HPS1 biogenesis of lysosomal organelles complex 3 subunit 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
inactive heparanase-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031775.1 Reference Parus_major1.1 Primary Assembly

    Range
    20262372..20369213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015633302.2 → XP_015488788.1  inactive heparanase-2

    Related
    ENSPMJP00000004606.1, ENSPMJT00000006458.1
    Conserved Domains (1) summary
    pfam03662
    Location:198 → 398
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.