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NDST2 N-deacetylase and N-sulfotransferase 2 [ Parus major (Great Tit) ]

Gene ID: 107206751, updated on 3-Aug-2024

Summary

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Gene symbol
NDST2
Gene description
N-deacetylase and N-sulfotransferase 2
See related
Ensembl:ENSPMJG00000015492
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See NDST2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 6 NC_031775.1 (11093295..11200050)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 6 NC_029275.1 (10082771..10193956)

Chromosome 6 - NC_031775.1Genomic Context describing neighboring genes Neighboring gene plasminogen activator, urokinase Neighboring gene calcium/calmodulin dependent protein kinase II gamma Neighboring gene zinc finger SWIM-type containing 8 Neighboring gene uncharacterized LOC107206900 Neighboring gene neurotrypsin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2
Names
N-deacetylase/N-sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031775.1 Reference Parus_major1.1 Primary Assembly

    Range
    11093295..11200050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015632879.3 → XP_015488365.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 510
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_033515831.1 → XP_033371722.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    Related
    ENSPMJP00000020849.1, ENSPMJT00000027137.1
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 510
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_015632880.3 → XP_015488366.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    Related
    ENSPMJP00000020848.1, ENSPMJT00000027136.1
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 510
    HSNSD; heparan sulfate-N-deacetylase

  4. XM_015632878.3 → XP_015488364.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    Related
    ENSPMJP00000020853.1, ENSPMJT00000027141.1
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 510
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

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