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SPAM1 sperm adhesion molecule 1 [ Parus major (Great Tit) ]

Gene ID: 107204979, updated on 3-Aug-2024

Summary

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Gene symbol
SPAM1
Gene description
sperm adhesion molecule 1
See related
Ensembl:ENSPMJG00000009925
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human all
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Genomic context

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See SPAM1 in Genome Data Viewer
Location:
chromosome: 1A
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 1A NC_031773.1 (20382481..20418250, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 1A NC_029273.1 (20382481..20418233, complement)

Chromosome 1A - NC_031773.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 37 Neighboring gene ADP-ribosylation factor-like protein 8B Neighboring gene hyaluronidase-4-like Neighboring gene hyaluronidase-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hyalurononglucosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fusion of sperm to egg plasma membrane involved in single fertilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hyaluronan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in acrosomal vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hyaluronidase PH-20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031773.1 Reference Parus_major1.1 Primary Assembly

    Range
    20382481..20418250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015629001.2 → XP_015484487.1  hyaluronidase PH-20 isoform X1

    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase

  2. XM_015628999.3 → XP_015484485.1  hyaluronidase PH-20 isoform X1

    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase

  3. XM_015628997.2 → XP_015484483.1  hyaluronidase PH-20 isoform X1

    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase

  4. XM_015629005.2 → XP_015484491.1  hyaluronidase PH-20 isoform X1

    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase

  5. XM_015629003.1 → XP_015484489.1  hyaluronidase PH-20 isoform X1

    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase

  6. XM_015629000.1 → XP_015484486.1  hyaluronidase PH-20 isoform X1

    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase

  7. XM_015628998.1 → XP_015484484.1  hyaluronidase PH-20 isoform X1

    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase

  8. XM_015629002.3 → XP_015484488.1  hyaluronidase PH-20 isoform X1

    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase

  9. XM_015629008.2 → XP_015484494.1  hyaluronidase PH-20 isoform X2

    Related
    ENSPMJP00000012965.1, ENSPMJT00000017039.1
    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase

  10. XM_015629004.3 → XP_015484490.1  hyaluronidase PH-20 isoform X1

    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase

  11. XM_019006784.2 → XP_018862329.1  hyaluronidase PH-20 isoform X1

  12. XM_015629006.3 → XP_015484492.1  hyaluronidase PH-20 isoform X1

    Conserved Domains (1) summary
    pfam01630
    Location:43 → 374
    Glyco_hydro_56; Hyaluronidase
Nucleotide Protein
Heading Accession and Version

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