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B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 [ Parus major (Great Tit) ]

Gene ID: 107204887, updated on 3-Aug-2024

Summary

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Gene symbol
B4GALNT3
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 3
See related
Ensembl:ENSPMJG00000019375
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See B4GALNT3 in Genome Data Viewer
Location:
chromosome: 1A
Exon count:
19
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 1A NC_031773.1 (69466092..69490055, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 1A NC_029273.1 (69466092..69512657, complement)

Chromosome 1A - NC_031773.1Genomic Context describing neighboring genes Neighboring gene WNK lysine deficient protein kinase 1 Neighboring gene uncharacterized LOC117244454 Neighboring gene ninjurin 2 Neighboring gene uncharacterized LOC107204785 Neighboring gene coiled-coil domain containing 77 Neighboring gene lysine demethylase 5A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-N-acetylgalactosaminyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031773.1 Reference Parus_major1.1 Primary Assembly

    Range
    69466092..69490055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033514524.1 → XP_033370415.1  beta-1,4-N-acetylgalactosaminyltransferase 3

    Related
    ENSPMJP00000026535.1, ENSPMJT00000034172.1
    Conserved Domains (2) summary
    smart00758
    Location:88 → 224
    PA14; domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins
    cl11394
    Location:666 → 972
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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