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PMM1 phosphomannomutase 1 [ Parus major (Great Tit) ]

Gene ID: 107204583, updated on 3-Aug-2024

Summary

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Gene symbol
PMM1
Gene description
phosphomannomutase 1
See related
Ensembl:ENSPMJG00000003708
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See PMM1 in Genome Data Viewer
Location:
chromosome: 1A
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 1A NC_031773.1 (47225683..47237368)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 1A NC_029273.1 (47225683..47236914)

Chromosome 1A - NC_031773.1Genomic Context describing neighboring genes Neighboring gene X-ray repair cross complementing 6 Neighboring gene desumoylating isopeptidase 1 Neighboring gene cold shock domain containing C2 Neighboring gene RNA polymerase III subunit H Neighboring gene aconitase 2 Neighboring gene PHD finger protein 5A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphomannomutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-mannose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphomannomutase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031773.1 Reference Parus_major1.1 Primary Assembly

    Range
    47225683..47237368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033514813.1 → XP_033370704.1  phosphomannomutase 1 isoform X1

    Conserved Domains (1) summary
    cd02585
    Location:9 → 216
    HAD_PMM; phosphomannomutase, similar to human PMM1 and PMM2, Saccharomyces Sec53p, and Arabidopsis thaliana PMM

  2. XM_015628002.2 → XP_015483488.1  phosphomannomutase 1 isoform X2

    Related
    ENSPMJP00000005003.1, ENSPMJT00000007041.1
    Conserved Domains (1) summary
    cd02585
    Location:9 → 247
    HAD_PMM; phosphomannomutase, similar to human PMM1 and PMM2, Saccharomyces Sec53p, and Arabidopsis thaliana PMM
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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