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TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Parus major (Great Tit) ]

Gene ID: 107204424, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
See related
Ensembl:ENSPMJG00000012833
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See TMTC3 in Genome Data Viewer
Location:
chromosome: 1A
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 1A NC_031773.1 (40520159..40550331)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 1A NC_029273.1 (40520178..40552638)

Chromosome 1A - NC_031773.1Genomic Context describing neighboring genes Neighboring gene chromosome 1A C12orf50 homolog Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene centrosomal protein 290 Neighboring gene KIT ligand Neighboring gene uncharacterized LOC107205198

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3
Names
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031773.1 Reference Parus_major1.1 Primary Assembly

    Range
    40520159..40550331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015627507.2 → XP_015482993.1  protein O-mannosyl-transferase TMTC3

    Conserved Domains (6) summary
    smart00028
    Location:446 → 479
    TPR; Tetratricopeptide repeats
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:597 → 628
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:258 → 331
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:564 → 628
    TPR_11; TPR repeat
    pfam13432
    Location:601 → 668
    TPR_16; Tetratricopeptide repeat

  2. XM_015627508.3 → XP_015482994.1  protein O-mannosyl-transferase TMTC3

    Related
    ENSPMJP00000017027.1, ENSPMJT00000022269.1
    Conserved Domains (6) summary
    smart00028
    Location:446 → 479
    TPR; Tetratricopeptide repeats
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:597 → 628
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:258 → 331
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:564 → 628
    TPR_11; TPR repeat
    pfam13432
    Location:601 → 668
    TPR_16; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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