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GALNT12 polypeptide N-acetylgalactosaminyltransferase 12 [ Parus major (Great Tit) ]

Gene ID: 107200796, updated on 3-Aug-2024

Summary

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Gene symbol
GALNT12
Gene description
polypeptide N-acetylgalactosaminyltransferase 12
See related
Ensembl:ENSPMJG00000013925
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See GALNT12 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 2 NC_031769.1 (89593666..89643663)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 2 NC_029269.1 (89593666..89640546)

Chromosome 2 - NC_031769.1Genomic Context describing neighboring genes Neighboring gene iroquois homeobox 1 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 6 Neighboring gene gamma-aminobutyric acid type B receptor subunit 2 Neighboring gene elongator acetyltransferase complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031769.1 Reference Parus_major1.1 Primary Assembly

    Range
    89593666..89643663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015619744.2 → XP_015475230.1  polypeptide N-acetylgalactosaminyltransferase 12 isoform X1

    Related
    ENSPMJP00000018553.1, ENSPMJT00000024279.1
    Conserved Domains (4) summary
    cd02510
    Location:142 → 436
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:137 → 432
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:450 → 582
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:448 → 580
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_019005807.1 → XP_018861352.1  polypeptide N-acetylgalactosaminyltransferase 12 isoform X2

  3. XM_019005808.1 → XP_018861353.1  polypeptide N-acetylgalactosaminyltransferase 12 isoform X3

Nucleotide Protein
Heading Accession and Version

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