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LOC107154433 mannose-binding protein A-like [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107154433, updated on 9-Nov-2023

Summary

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Gene symbol
LOC107154433
Gene description
mannose-binding protein A-like
See related
Ensembl:ENSMMMG00000010822
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
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Genomic context

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See LOC107154433 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_025999945.1 (53211..58295, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351276.1 (53211..58293, complement)

NW_025999945.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-like Neighboring gene surfactant protein D Neighboring gene uncharacterized LOC125616416 Neighboring gene pulmonary surfactant-associated protein A-like Neighboring gene uncharacterized LOC125616417

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in surfactant homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannose-binding protein A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_025999945.1 Reference marMar

    Range
    53211..58295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015500047.2 → XP_015355533.1  mannose-binding protein A-like

    UniProtKB/TrEMBL
    A0A8C5ZC07
    Related
    ENSMMMP00000012092.1
    Conserved Domains (2) summary
    cd03591
    Location:136 → 246
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:43 → 96
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_015500048.2 → XP_015355534.1  mannose-binding protein A-like

    UniProtKB/TrEMBL
    A0A8C5ZC07
    Conserved Domains (2) summary
    cd03591
    Location:136 → 246
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:43 → 96
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_015500049.2 → XP_015355535.1  mannose-binding protein A-like

    UniProtKB/TrEMBL
    A0A8C5ZC07
    Conserved Domains (2) summary
    cd03591
    Location:136 → 246
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:43 → 96
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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