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Washc4 WASH complex subunit 4 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107139937, updated on 1-Aug-2024

Summary

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Gene symbol
Washc4
Gene description
WASH complex subunit 4
See related
Ensembl:ENSMMMG00000017204
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Also known as
Kiaa1033
Orthologs
human mouse all
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Genomic context

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See Washc4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_025999853.1 (7147358..7206022, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351221.1 (7147797..7203106, complement)

NW_025999853.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C12orf75 homolog Neighboring gene uncharacterized LOC125616146 Neighboring gene adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 Neighboring gene aldehyde dehydrogenase 1 family member L2 Neighboring gene NOP protein chaperone 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_025999853.1 Reference marMar

    Range
    7147358..7206022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048802749.1 → XP_048658706.1  WASH complex subunit 4 isoform X2

    UniProtKB/TrEMBL
    A0AAJ8A4N0

  2. XM_015482818.2 → XP_015338304.1  WASH complex subunit 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C5ZX88
    Related
    ENSMMMP00000019504.1
    Conserved Domains (3) summary
    pfam14744
    Location:612 → 945
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:32 → 600
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:966 → 1135
    WASH-7_C; WASH complex subunit 7, C-terminal

  3. XM_048802764.1 → XP_048658721.1  WASH complex subunit 4 isoform X4

    UniProtKB/TrEMBL
    A0AAJ8A4P0

  4. XM_015482820.2 → XP_015338306.1  WASH complex subunit 4 isoform X3

    UniProtKB/TrEMBL
    A0AAJ7EUX7
    Conserved Domains (3) summary
    pfam14744
    Location:485 → 818
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:1 → 473
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:839 → 1008
    WASH-7_C; WASH complex subunit 7, C-terminal

  5. XM_048802770.1 → XP_048658727.1  WASH complex subunit 4 isoform X5

    UniProtKB/TrEMBL
    A0AAJ8A647

RNA

  1. XR_007347417.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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