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AGL amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferase [ Gekko japonicus ]

Gene ID: 107119045, updated on 20-Oct-2024

Summary

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Gene symbol
AGL
Gene description
amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
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Genomic context

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See AGL in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015172582.1 (555882..609732, complement)

NW_015172582.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L5 Neighboring gene divergent protein kinase domain 1A Neighboring gene ferric-chelate reductase 1-like Neighboring gene palmdelphin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015172582.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-alpha-glucanotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amylo-alpha-1,6-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen debranching enzyme
Names
amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015172582.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    555882..609732 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015421468.1 → XP_015276954.1  glycogen debranching enzyme isoform X1

    Conserved Domains (5) summary
    cd11327
    Location:105 → 584
    AmyAc_Glg_debranch_2; Alpha amylase catalytic domain found in glycogen debranching enzymes
    TIGR01531
    Location:22 → 1533
    glyc_debranch; glycogen debranching enzymye
    pfam06202
    Location:1074 → 1528
    GDE_C; Amylo-alpha-1,6-glucosidase
    pfam14699
    Location:31 → 116
    hGDE_N; N-terminal domain from the human glycogen debranching enzyme
    pfam14702
    Location:698 → 975
    hGDE_central; central domain of human glycogen debranching enzyme

  2. XM_015421469.1 → XP_015276955.1  glycogen debranching enzyme isoform X2

    Conserved Domains (5) summary
    cd11327
    Location:105 → 583
    AmyAc_Glg_debranch_2; Alpha amylase catalytic domain found in glycogen debranching enzymes
    TIGR01531
    Location:22 → 1532
    glyc_debranch; glycogen debranching enzymye
    pfam06202
    Location:1073 → 1527
    GDE_C; Amylo-alpha-1,6-glucosidase
    pfam14699
    Location:31 → 116
    hGDE_N; N-terminal domain from the human glycogen debranching enzyme
    pfam14702
    Location:697 → 974
    hGDE_central; central domain of human glycogen debranching enzyme

  3. XM_015421467.1 → XP_015276953.1  glycogen debranching enzyme isoform X1

    Conserved Domains (5) summary
    cd11327
    Location:105 → 584
    AmyAc_Glg_debranch_2; Alpha amylase catalytic domain found in glycogen debranching enzymes
    TIGR01531
    Location:22 → 1533
    glyc_debranch; glycogen debranching enzymye
    pfam06202
    Location:1074 → 1528
    GDE_C; Amylo-alpha-1,6-glucosidase
    pfam14699
    Location:31 → 116
    hGDE_N; N-terminal domain from the human glycogen debranching enzyme
    pfam14702
    Location:698 → 975
    hGDE_central; central domain of human glycogen debranching enzyme
Nucleotide Protein
Heading Accession and Version

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