U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ACLY ATP citrate lyase [ Gekko japonicus ]

Gene ID: 107116244, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ACLY
Gene description
ATP citrate lyase
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ACLY in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015170331.1 (313467..415357)

NW_015170331.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C7 Neighboring gene 2',3'-cyclic nucleotide 3' phosphodiesterase Neighboring gene outer dynein arm docking complex subunit 4

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015170331.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP citrate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in citrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ATP-citrate synthase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015170331.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    313467..415357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015418132.1 → XP_015273618.1  ATP-citrate synthase isoform X1

    Conserved Domains (7) summary
    cd06100
    Location:878 → 1115
    CCL_ACL-C; Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ...
    PLN02235
    Location:1 → 419
    PLN02235; ATP citrate (pro-S)-lyase
    PLN02522
    Location:513 → 1116
    PLN02522; ATP citrate (pro-S)-lyase
    smart00881
    Location:514 → 623
    CoA_binding; CoA binding domain
    pfam16114
    Location:247 → 421
    Citrate_bind; ATP citrate lyase citrate-binding
    cl17255
    Location:55 → 207
    ATP-grasp_4; ATP-grasp domain
    cl22543
    Location:682 → 806
    Ligase_CoA; CoA-ligase

  2. XM_015418134.1 → XP_015273620.1  ATP-citrate synthase isoform X2

    Conserved Domains (7) summary
    cd06100
    Location:868 → 1105
    CCL_ACL-C; Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ...
    PLN02235
    Location:1 → 419
    PLN02235; ATP citrate (pro-S)-lyase
    PLN02522
    Location:503 → 1106
    PLN02522; ATP citrate (pro-S)-lyase
    smart00881
    Location:504 → 613
    CoA_binding; CoA binding domain
    pfam16114
    Location:247 → 421
    Citrate_bind; ATP citrate lyase citrate-binding
    cl17255
    Location:55 → 207
    ATP-grasp_4; ATP-grasp domain
    cl22543
    Location:672 → 796
    Ligase_CoA; CoA-ligase

  3. XM_015418135.1 → XP_015273621.1  ATP-citrate synthase isoform X3

    Conserved Domains (7) summary
    cd06100
    Location:856 → 1093
    CCL_ACL-C; Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ...
    PLN02235
    Location:1 → 419
    PLN02235; ATP citrate (pro-S)-lyase
    PLN02522
    Location:491 → 1094
    PLN02522; ATP citrate (pro-S)-lyase
    smart00881
    Location:492 → 601
    CoA_binding; CoA binding domain
    pfam16114
    Location:247 → 421
    Citrate_bind; ATP citrate lyase citrate-binding
    cl17255
    Location:55 → 207
    ATP-grasp_4; ATP-grasp domain
    cl22543
    Location:660 → 784
    Ligase_CoA; CoA-ligase

  4. XM_015418136.1 → XP_015273622.1  ATP-citrate synthase isoform X4

    Conserved Domains (7) summary
    cd06100
    Location:846 → 1083
    CCL_ACL-C; Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ...
    PLN02235
    Location:1 → 419
    PLN02235; ATP citrate (pro-S)-lyase
    PLN02522
    Location:481 → 1084
    PLN02522; ATP citrate (pro-S)-lyase
    smart00881
    Location:482 → 591
    CoA_binding; CoA binding domain
    pfam16114
    Location:247 → 421
    Citrate_bind; ATP citrate lyase citrate-binding
    cl17255
    Location:55 → 207
    ATP-grasp_4; ATP-grasp domain
    cl22543
    Location:650 → 774
    Ligase_CoA; CoA-ligase

  5. XM_015418133.1 → XP_015273619.1  ATP-citrate synthase isoform X1

    Conserved Domains (7) summary
    cd06100
    Location:878 → 1115
    CCL_ACL-C; Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ...
    PLN02235
    Location:1 → 419
    PLN02235; ATP citrate (pro-S)-lyase
    PLN02522
    Location:513 → 1116
    PLN02522; ATP citrate (pro-S)-lyase
    smart00881
    Location:514 → 623
    CoA_binding; CoA binding domain
    pfam16114
    Location:247 → 421
    Citrate_bind; ATP citrate lyase citrate-binding
    cl17255
    Location:55 → 207
    ATP-grasp_4; ATP-grasp domain
    cl22543
    Location:682 → 806
    Ligase_CoA; CoA-ligase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.