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FARSB phenylalanyl-tRNA synthetase subunit beta [ Gekko japonicus ]

Gene ID: 107115858, updated on 14-Mar-2024

Summary

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Gene symbol
FARSB
Gene description
phenylalanyl-tRNA synthetase subunit beta
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
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Genomic context

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See FARSB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015170276.1 (902090..950046)

NW_015170276.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase long chain family member 3 Neighboring gene monoacylglycerol O-acyltransferase 1 Neighboring gene sphingosine-1-phosphate phosphatase 2 Neighboring gene paired box 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015170276.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phenylalanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phenylalanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phenylalanine-tRNA ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phenylalanine--tRNA ligase beta subunit
Names
phenylalanyl-tRNA synthetase beta subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015170276.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    902090..950046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015417627.1 → XP_015273113.1  phenylalanine--tRNA ligase beta subunit

    Conserved Domains (4) summary
    smart00873
    Location:119 → 279
    B3_4; B3/4 domain
    PLN02265
    Location:1 → 589
    PLN02265; probable phenylalanyl-tRNA synthetase beta chain
    cd00769
    Location:393 → 588
    PheRS_beta_core; Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an ...
    pfam03484
    Location:306 → 375
    B5; tRNA synthetase B5 domain
Nucleotide Protein
Heading Accession and Version

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