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KIRREL3 kirre like nephrin family adhesion molecule 3 [ Gekko japonicus ]

Gene ID: 107114767, updated on 14-Mar-2024

Summary

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Gene symbol
KIRREL3
Gene description
kirre like nephrin family adhesion molecule 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
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Genomic context

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See KIRREL3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015169207.1 (149937..583609)

NW_015169207.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015169207.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kin of IRRE like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015169207.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    149937..583609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015416357.1 → XP_015271843.1  kin of IRRE-like protein 3

    Conserved Domains (6) summary
    cd05759
    Location:175 → 256
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    smart00408
    Location:359 → 410
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:64 → 153
    IG_like; Immunoglobulin like
    pfam07679
    Location:345 → 426
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:264 → 341
    Ig_2; Immunoglobulin domain
    cl11960
    Location:62 → 153
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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