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LOC107107552 pulmonary surfactant-associated protein D-like [ Gekko japonicus ]

Gene ID: 107107552, updated on 2-Nov-2023

Summary

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Gene symbol
LOC107107552
Gene description
pulmonary surfactant-associated protein D-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
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Genomic context

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See LOC107107552 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015159832.1 (68682..75052, complement)

NW_015159832.1Genomic Context describing neighboring genes Neighboring gene pulmonary surfactant-associated protein D-like Neighboring gene pulmonary surfactant-associated protein D pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015159832.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in surfactant homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015159832.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    68682..75052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015407862.1 → XP_015263348.1  pulmonary surfactant-associated protein D-like

    Conserved Domains (3) summary
    pfam01391
    Location:38 → 93
    Collagen; Collagen triple helix repeat (20 copies)
    pfam09006
    Location:97 → 136
    Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerization
    cl02432
    Location:133 → 247
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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