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TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Gekko japonicus ]

Gene ID: 107107143, updated on 14-Mar-2024

Summary

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Gene symbol
TMTC3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
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Genomic context

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See TMTC3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015159800.1 (5782..47847, complement)

NW_015159800.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 290 Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015159800.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 3
Names
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015159800.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    5782..47847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015407397.1 → XP_015262883.1  transmembrane and TPR repeat-containing protein 3

    Conserved Domains (6) summary
    smart00028
    Location:456 → 489
    TPR; Tetratricopeptide repeats
    COG0457
    Location:412 → 695
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:540 → 567
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:607 → 640
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:268 → 341
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:749 → 812
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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