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MTCO1P50 MT-CO1 pseudogene 50 [ Homo sapiens (human) ]

Gene ID: 107105279, updated on 17-Sep-2024

Summary

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Official Symbol
MTCO1P50provided by HGNC
Official Full Name
MT-CO1 pseudogene 50provided by HGNC
Primary source
HGNC:HGNC:52115
See related
AllianceGenome:HGNC:52115
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See MTCO1P50 in Genome Data Viewer
Location:
9q21.31
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (78740990..78741321)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (90899534..90899865)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (81355906..81356237)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:80911871-80912454 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19967 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:80965189-80965688 Neighboring gene phosphoserine aminotransferase 1 Neighboring gene uncharacterized LOC107987083 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28488 Neighboring gene NANOG hESC enhancer GRCh37_chr9:81008146-81008712 Neighboring gene VISTA enhancer hs1530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:81024941-81025440 Neighboring gene VISTA enhancer hs1585 Neighboring gene NANOG hESC enhancer GRCh37_chr9:81117468-81117969 Neighboring gene MT-ND2 pseudogene 8 Neighboring gene VISTA enhancer hs312 Neighboring gene uncharacterized LOC105376097 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:81486161-81487360

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • mitochondrially encoded cytochrome c oxidase I pseudogene 50

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_046599.1 

    Range
    101..432
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    78740990..78741321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    90899534..90899865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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