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dpy19l4 dpy-19 like 4 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107105226, updated on 2-Nov-2023

Summary

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Gene symbol
dpy19l4
Gene description
dpy-19 like 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See dpy19l4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015152623.1 (1118..11416)

NW_015152623.1Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015152623.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015152623.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    1118..11416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015405351.1 → XP_015260837.1  probable C-mannosyltransferase DPY19L4

    UniProtKB/TrEMBL
    A0A3Q2ECQ3
    Conserved Domains (1) summary
    pfam10034
    Location:30 → 515
    Dpy19; Q-cell neuroblast polarization
Nucleotide Protein
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