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sgca sarcoglycan, alpha [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107102377, updated on 14-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151698.1 (99041..112861, complement)

NW_015151698.1Genomic Context describing neighboring genes Neighboring gene putative all-trans-retinol 13,14-reductase Neighboring gene collagen alpha-1(I) chain-like Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene zinc finger protein 91-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151698.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151698.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    99041..112861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015401665.1 → XP_015257151.1  alpha-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A3Q2CVM9
    Conserved Domains (1) summary
    pfam05510
    Location:31 → 326
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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