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rpl11 ribosomal protein L11 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107101089, updated on 14-Mar-2024

Summary

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Gene symbol
rpl11
Gene description
ribosomal protein L11
See related
Ensembl:ENSCVAG00000019408
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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See rpl11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151506.1 (130570..134857, complement)

NW_015151506.1Genomic Context describing neighboring genes Neighboring gene elongin A Neighboring gene kelch-like family member 43 Neighboring gene cyclic GMP-AMP synthase-like Neighboring gene elongation factor 1-alpha-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151506.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151506.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    130570..134857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015399850.1 → XP_015255336.1  60S ribosomal protein L11

    UniProtKB/TrEMBL
    A0A3Q2DCD6
    Related
    ENSCVAP00000016432.1, ENSCVAT00000024903.1
    Conserved Domains (1) summary
    PTZ00156
    Location:6 → 175
    PTZ00156; 60S ribosomal protein L11; Provisional
Nucleotide Protein
Heading Accession and Version

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