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LOC107100292 mitochondrial basic amino acids transporter-like [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107100292, updated on 2-Nov-2023

Summary

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Gene symbol
LOC107100292
Gene description
mitochondrial basic amino acids transporter-like
See related
Ensembl:ENSCVAG00000004838
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
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Genomic context

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See LOC107100292 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151409.1 (50267..56194, complement)

NW_015151409.1Genomic Context describing neighboring genes Neighboring gene vertebrae development associated Neighboring gene uncharacterized LOC107100297 Neighboring gene solute carrier family 25 member 47a Neighboring gene thyroxine 5-deiodinase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151409.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-affinity L-arginine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial basic amino acids transporter-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151409.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    50267..56194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015398726.1 → XP_015254212.1  mitochondrial basic amino acids transporter-like

    UniProtKB/TrEMBL
    A0A3Q2CF92
    Related
    ENSCVAP00000003632.1, ENSCVAT00000009710.1
    Conserved Domains (2) summary
    PTZ00169
    Location:2 → 261
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    pfam00153
    Location:86 → 177
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

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