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LOC107099393 secreted frizzled-related protein 1-like [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107099393, updated on 2-Nov-2023

Summary

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Gene symbol
LOC107099393
Gene description
secreted frizzled-related protein 1-like
See related
Ensembl:ENSCVAG00000017002
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
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Genomic context

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See LOC107099393 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151319.1 (135273..162253, complement)

NW_015151319.1Genomic Context describing neighboring genes Neighboring gene GTPase IMAP family member 8-like Neighboring gene calpain-9-like Neighboring gene golgin subfamily A member 7-like Neighboring gene lysyl oxidase homolog 2B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151319.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151319.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    135273..162253 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015397488.1 → XP_015252974.1  secreted frizzled-related protein 1-like

    UniProtKB/TrEMBL
    A0A3Q2ECA0
    Related
    ENSCVAP00000029314.1, ENSCVAT00000031082.1
    Conserved Domains (2) summary
    cd03580
    Location:174 → 273
    NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
    cl02447
    Location:45 → 167
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
Nucleotide Protein
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