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asph aspartate beta-hydroxylase [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107098908, updated on 2-Nov-2023

Summary

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Gene symbol
asph
Gene description
aspartate beta-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
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Genomic context

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See asph in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151274.1 (241657..254260, complement)

NW_015151274.1Genomic Context describing neighboring genes Neighboring gene clavesin-1-like Neighboring gene RIO kinase 3 (yeast) Neighboring gene stress response protein NST1-like Neighboring gene sodium channel protein type 3 subunit alpha-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151274.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151274.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    241657..254260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015396798.1 → XP_015252284.1  aspartyl/asparaginyl beta-hydroxylase

    Conserved Domains (6) summary
    sd00008
    Location:206 → 231
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:283 → 309
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:452 → 605
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    pfam13414
    Location:283 → 346
    TPR_11; TPR repeat
    pfam13432
    Location:207 → 270
    TPR_16; Tetratricopeptide repeat
    pfam15724
    Location:48 → 175
    TMEM119; TMEM119 family
Nucleotide Protein
Heading Accession and Version

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