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mettl5 methyltransferase 5, N6-adenosine [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107093556, updated on 14-Mar-2024

Summary

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Gene symbol
mettl5
Gene description
methyltransferase 5, N6-adenosine
See related
Ensembl:ENSCVAG00000021572
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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See mettl5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150885.1 (284842..291191)

NW_015150885.1Genomic Context describing neighboring genes Neighboring gene myosin IIIB Neighboring gene ubiquitin protein ligase E3 component n-recognin 3 Neighboring gene small RNA binding exonuclease protection factor La Neighboring gene kelch-like family member 23 Neighboring gene phosphoglycerate dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150885.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA (adenine-N6-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methyltransferase-like protein 5
Names
methyltransferase like 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150885.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    284842..291191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015388685.1 → XP_015244171.1  methyltransferase-like protein 5

    UniProtKB/TrEMBL
    A0A3Q2DGX1
    Related
    ENSCVAP00000018327.1, ENSCVAT00000032682.1
    Conserved Domains (1) summary
    COG2263
    Location:4 → 207
    COG2263; Predicted RNA methylase [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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