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colgalt1a collagen beta(1-O)galactosyltransferase 1a [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107093391, updated on 14-Mar-2024

Summary

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Gene symbol
colgalt1a
Gene description
collagen beta(1-O)galactosyltransferase 1a
See related
Ensembl:ENSCVAG00000023369
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
zebrafish all
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Genomic context

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See colgalt1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150876.1 (160451..173951, complement)

NW_015150876.1Genomic Context describing neighboring genes Neighboring gene LIM homeobox transcription factor 1, alpha-like Neighboring gene GEM interacting protein Neighboring gene oocyte zinc finger protein XlCOF8.4-like Neighboring gene 6-phosphogluconolactonase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150876.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150876.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    160451..173951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015388424.1 → XP_015243910.1  procollagen galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3Q2FBU5
    Related
    ENSCVAP00000000095.1, ENSCVAT00000015649.1
    Conserved Domains (2) summary
    cl01298
    Location:327 → 512
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:47 → 107
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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