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sap18 Sin3A-associated protein [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107086985, updated on 14-Mar-2024

Summary

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Gene symbol
sap18
Gene description
Sin3A-associated protein
See related
Ensembl:ENSCVAG00000000990
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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See sap18 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150462.1 (2028456..2032375)

NW_015150462.1Genomic Context describing neighboring genes Neighboring gene gap junction alpha-3 protein-like Neighboring gene gap junction beta-6 protein-like Neighboring gene RNA transcription, translation and transport factor Neighboring gene nidogen 2a (osteonidogen) Neighboring gene prostaglandin E receptor 2a (subtype EP2)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150462.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase complex subunit SAP18
Names
Sin3A associated protein 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150462.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    2028456..2032375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015378308.1 → XP_015233794.1  histone deacetylase complex subunit SAP18

    UniProtKB/TrEMBL
    A0A3Q2DWD0
    Related
    ENSCVAP00000024196.1, ENSCVAT00000004797.1
    Conserved Domains (1) summary
    pfam06487
    Location:19 → 137
    SAP18; Sin3 associated polypeptide p18 (SAP18)
Nucleotide Protein
Heading Accession and Version

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