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ODF2-AS1 ODF2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107080620, updated on 10-Oct-2023

Summary

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Official Symbol
ODF2-AS1provided by HGNC
Official Full Name
ODF2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49461
See related
Ensembl:ENSG00000225951 AllianceGenome:HGNC:49461
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
9q34.11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (128468925..128473012, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (140675764..140679867, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (131231204..131235291, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20339 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29081 Neighboring gene cerebral endothelial cell adhesion molecule Neighboring gene ReSE screen-validated silencer GRCh37_chr9:131200897-131201070 Neighboring gene protein PAT1 homolog 1-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:131217358-131218094 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:131218095-131218830 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:131218831-131219566 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:131219567-131220302 Neighboring gene outer dense fiber of sperm tails 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:131234689-131235190 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:131235191-131235690 Neighboring gene uncharacterized LOC124902281 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:131257065-131257565 Neighboring gene Sharpr-MPRA regulatory region 9551 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20344 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29084 Neighboring gene GLE1 RNA export mediator Neighboring gene uncharacterized LOC101929270

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_170291.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL359091
    Related
    ENST00000420801.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    128468925..128473012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    140675764..140679867 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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