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Scgdelta sarcoglycan delta [ Diachasma alloeum ]

Gene ID: 107041118, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Diachasma alloeum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Ichneumonoidea; Braconidae; Opiinae; Diachasma
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Dall2.0 (GCF_001412515.2) Unplaced Scaffold NW_021680493.1 (330570..452549, complement)
100 previous assembly Dall1.0 (GCF_001412515.1) Unplaced Scaffold NW_015145153.1 (330570..452549, complement)

NW_021680493.1Genomic Context describing neighboring genes Neighboring gene proton channel OtopLc Neighboring gene uncharacterized LOC107041005 Neighboring gene GAS2-like protein pickled eggs Neighboring gene uncharacterized LOC107041120

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Diachasma alloeum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dall2.0

Genomic

  1. NW_021680493.1 Reference Dall2.0

    Range
    330570..452549 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015261517.1 → XP_015117003.1  zeta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:134 → 398
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_015261519.1 → XP_015117005.1  zeta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:57 → 321
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_015261518.1 → XP_015117004.1  zeta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:57 → 321
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases