U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TMEM199 transmembrane protein 199 [ Vicugna pacos (alpaca) ]

Gene ID: 107034338, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TMEM199
Gene description
transmembrane protein 199
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TMEM199 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
7
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 16 Unlocalized Scaffold NW_021964190.1 (4089044..4094713)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882847.1 (614017..619640, complement)

NW_021964190.1Genomic Context describing neighboring genes Neighboring gene TNF alpha induced protein 1 Neighboring gene DNA polymerase delta interacting protein 2 Neighboring gene SEBOX homeobox Neighboring gene vitronectin

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transmembrane protein 199

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964190.1 Reference VicPac3.1 Primary Assembly

    Range
    4089044..4094713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015245816.2 → XP_015101302.1  transmembrane protein 199 isoform X3

    UniProtKB/TrEMBL
    A0A6J0ATT5
    Conserved Domains (1) summary
    pfam11712
    Location:77 → 172
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase

  2. XM_015245815.2 → XP_015101301.1  transmembrane protein 199 isoform X2

    UniProtKB/TrEMBL
    A0A6J0ARU4
    Conserved Domains (1) summary
    pfam11712
    Location:77 → 172
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase

  3. XM_015245814.2 → XP_015101300.1  transmembrane protein 199 isoform X1

    UniProtKB/TrEMBL
    A0A6J0AT02
    Conserved Domains (1) summary
    pfam11712
    Location:77 → 201
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.