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LOC107015670 F-box protein GID2 [ Solanum pennellii ]

Gene ID: 107015670, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107015670
Gene description
F-box protein GID2
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum pennellii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC107015670 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
101 current SPENNV200 (GCF_001406875.1) 4 NC_028640.1 (73605748..73606802)

Chromosome 4 - NC_028640.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 81E8-like Neighboring gene MFP1 attachment factor 1 Neighboring gene protein MRG1-like Neighboring gene putative receptor protein kinase ZmPK1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_028640.1 Chromosome 4 Reference SPENNV200

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum pennellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SPENNV200

Genomic

  1. NC_028640.1 Reference SPENNV200

    Range
    73605748..73606802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015216001.1 → XP_015071487.1  F-box protein GID2

    Conserved Domains (1) summary
    pfam00646
    Location:74 → 116
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version

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