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hcfc1a host cell factor C1a [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106964927, updated on 13-Mar-2024

Summary

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Gene symbol
hcfc1a
Gene description
host cell factor C1a
See related
Ensembl:ENSPLAG00000019703
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
hcfc1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015114353.1 (30712..46607)

NW_015114353.1Genomic Context describing neighboring genes Neighboring gene blue-sensitive opsin Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene uncharacterized LOC106964934 Neighboring gene GATA binding protein 1a Neighboring gene uncharacterized LOC106964936

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015114353.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1
Names
host cell factor C1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015114353.1 Reference P_latipinna-1.0

    Range
    30712..46607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015060720.1 → XP_014916206.1  host cell factor 1

    UniProtKB/TrEMBL
    A0A3B3UQS4
    Related
    ENSPLAP00000015730.1, ENSPLAT00000024514.1
    Conserved Domains (5) summary
    PLN02153
    Location:16 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1504 → 1533
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:33 → 70
    Kelch_1; Kelch motif
    pfam13415
    Location:216 → 264
    Kelch_3; Galactose oxidase, central domain
Nucleotide Protein
Heading Accession and Version

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