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eftud2 elongation factor Tu GTP binding domain containing 2 [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106961833, updated on 13-Mar-2024

Summary

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Gene symbol
eftud2
Gene description
elongation factor Tu GTP binding domain containing 2
See related
Ensembl:ENSPLAG00000010393
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See eftud2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015113956.1 (25912..40657, complement)

NW_015113956.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106961828 Neighboring gene phosphoethanolamine/phosphocholine phosphatase 1 Neighboring gene zinc finger protein 652

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015113956.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U5 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
116 kDa U5 small nuclear ribonucleoprotein component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015113956.1 Reference P_latipinna-1.0

    Range
    25912..40657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015055886.1 → XP_014911372.1  116 kDa U5 small nuclear ribonucleoprotein component

    UniProtKB/TrEMBL
    A0A3B3U4T0
    Related
    ENSPLAP00000007888.1, ENSPLAT00000003803.1
    Conserved Domains (7) summary
    cd04167
    Location:129 → 327
    Snu114p; Snu114p, a spliceosome protein, is a GTPase
    cd01683
    Location:656 → 833
    EF2_IV_snRNP; EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. ...
    cd04098
    Location:828 → 907
    eEF2_C_snRNP; eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the ...
    PTZ00416
    Location:121 → 953
    PTZ00416; elongation factor 2; Provisional
    pfam16004
    Location:4 → 109
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
    cd04090
    Location:473 → 566
    EF2_II_snRNP; Domain II of the spliceosomal 116kD U5 small nuclear ribonucleoprotein (snRNP) component
    cd16264
    Location:585 → 656
    snRNP_III; Domain III of the spliceosomal 116kD U5 small nuclear ribonucleoprotein (snRNP) component
Nucleotide Protein
Heading Accession and Version

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